Peer-reviewed Publications
W. Garrett, M. Rooks, P. Veiga, L. Wardwell-Scott, N. Segata, T. Tickle, C. A. Gallini, M. Michaud, C. Beal, J. van Hylckama Vlieg, S. Ballal, X. Morgan, J. Glickman, D. Gevers, and C. Huttenhower, "Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission", ISME Journal, 2014.
(Highlighted in Nature Review Gastroenterology)
http://www.jci.org/articles/view/75436
Y. Haberman, T. Tickle, P. Dexheimer, M. Kim, D. Tang, R. Karns, R. Baldassano, J. Noe, J. Rosh, J. Markowitz, M. Heyman, A. Griffiths, W. Crandall, D. Mack, S. Baker, C. Huttenhower, D. Keljo, J. Hyams, S. Kugathasan, T. Walters, B. Aronow, R. Xavier, D. Gevers, and L. Denson, "Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature", The Journal of Clinical Investigation, 2014.
http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej20143a.html
T. L. Tickle, N. Segata, L. Waldron, U. Weingart, and C. Huttenhower, "Two-stage microbial community experimental design," ISME Journal, 2013.
http://www.nature.com/ismej/journal/vaop/ncurrent/full/ismej2013139a.html
N. Segata, D. Boernigen, T. L. Tickle, X. C. Morgan, W. S. Garrett, and C. Huttenhower, "Computational metaomics for microbial community studies," Molecular Systems Biology, vol. 9, 2013.
( Selected for F1000Prime )
http://msb.embopress.org/content/9/1/666
T. L. Tickle, H. Sokol, X. Morgan, D. Gevers, K. Devaney, D. Ward, J. Reyes, S. Shah, N. LeLeiko, S. Snapper, A. Bousvaros, J. Korzenik, B. Sands, R. Xavier, and C. Huttenhower, "Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment," Genome Biology, vol. 13, no. R79, 2012.
http://genomebiology.com/content/13/9/R79
T. L. Tickle, Data Mining the Serous Ovarian Tumor Transcriptome. PhD thesis, University of North Carolina at Charlotte, 2011.
Z. Mostafavi, T. L. Tickle, J. Zhang, K. Bennett, J. Vachris, M. Spencer, M. T. Mostafavi, and D. Tait, "Correlation analysis of hox, erbb and igfbp family gene expression in ovarian cancer," Cancer Investigation, vol. 26, pp. 990-998, 2008.
http://www.ncbi.nlm.nih.gov/pubmed/19093257
A. Fodor, T. L. Tickle, and C. Richardson, "Towards the uniform distribution of null p values on affymetrix microarrays," Genome Biology, vol. 8, no. 5, 2007.